About

I’m a reseracher at Center for Artificial Intelligence Research and Innovation (CAIRI AI Lab), led by Prof. Stan Z. Li and Environmental Science and Engineering Environmental Microbiome and Biotechnology Laboratory (EMBLab), led by Dr. Feng Ju. There I am engaging with AI for Science (AI4Sci), particularly on protein structure prediction, RNA virus indentification and microbiome foundation model.

Research Interests

I’m now focusing on AI virtual health and digital twin of healthy human.

1. Biological Foundation model (DNA, RNA, Amino acids).
2. Multi-modal Mecidal Foundation model (multi-omics, clinical data)
3. AI in identification RNA virus.
4. Antimicrobial resistance

Education

• 2020.09 - 2023.06 M.Phil at Harbin Institute of Technology (HIT)
• 2016.09 - 2020.06 B.sc at Jilin Agricultural University (JLAU)

Internship and Working

• 2026.06 - present Internship at Shanghai AI Lab
• 2025.06 - present Visiting scholoar at CAIRI, Westlake University
• 2024.01 - 2025.05 Research Assistnat at CAIRI and EMBLab, Westlake University
• 2023.09 - 2025.05 Research intern at UNSW Microbiome Research Center.
• 2022.12 - 2023.08 Research intern in AI for Healthcare Group, Chinese University of Hong Kong.
• 2021.4 - 2022.04 Visiting student at SUSTech.

Publication & Software

Representative publications (including preprint and under preparation)

📄 CompRanking: a pipeline for quantitatively ranking the risk antimicrobial resistance in environmental metagenomic samples

Authors: Gaoyang Luo

Software: Open-sourced

This pipeline is used to quantitatively ranking AMR risk in environmental metagenomic samples

📄 Expanding the RNA Virus Universe by Deep Learning Discovery

Authors: Gaoyang Luo#, Zelin Zang, Ling Yuan, Jingbo Zhou, Ao Dong, Yufei Huang, Stan Z. Li, Feng Ju*

Journal Artile: BioRxiv

Identification of RNA virus using Deep Learning

📄 Rider: A deep learning method for fast RNA identification

Authors: Gaoyang Luo

Software: Open-sourced

Identification of RNA virus using deep learning

📄 Determining Antimicrobial Resistance in the Plastisphere: Lower Risks of Nonbiodegradable vs Higher Risks of Biodegradable Microplastics

Authors: Gaoyang Luo, Lu Fan, Bin Liang, Jianhua Guo, Shu-Hong Gao*

Journal Article: Environmental Science & Technology, 2025 (Nature Index Journal, Q1 Top)

Quantifing the AMR risk in the plastisphere

📄 Determining the Contribution of Micro/Nanoplastics to Antimicrobial Resistance: Challenges and Perspectives

Authors: Gaoyang Luo, Bin Liang, Hanlin Cui, Yuanyuan Kang, Xu Zhou, Yu Tao, Lu Lu, Lu Fan, Jianhua Guo, Aijie Wang, *Shu-Hong Gao*

Journal Article: Environmental Science & Technology, 2023 (Nature Index Journal, Q1 Top)

Review of AMR risk in the plastisphere